Cytogenetics-Example-1
type: Observation
node role: treeRoot
id:
  v: Cytogenetics-Example-1
meta:
  profile:
    v: http://fhir.nmdp.org/ig/cibmtr-reporting/StructureDefinition/cibmtr-cytogenetics
    link: http://fhir.nmdp.org/ig/cibmtr-reporting/StructureDefinition/cibmtr-cytogenetics
  security:
    system:
      v: http://terminology.cibmtr.org/codesystem/transplant-center
    code:
      v: rc_99999
    display:
      v: 99999 My Transplant Center
text:
  status:
    v: generated
  div: Generated Narrative: Observation Cytogenetics-Example-1 Profile: CIBMTR Cytogenetics Profile Security Label: 99999 My Transplant Center (Details: transplant-center code rc_99999 = '99999 My Transplant Center') status: Final category: Laboratory code: Genetic variant assessment subject: Jane Doe Female, DoB Unknown ( http://example.org/mrn#abc) effective: 2022-05-01 method: Fluorescence in situ hybridization component code: Variant ISCN value: <span title="Codes:{https://iscn.karger.com 47<2n>,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2)}">47<2n>,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2) component code: Genomic source class value: Somatic
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
    code:
      v: laboratory
code:
  coding: https://loinc.org/rdf/69548-6
    system:
      v: http://loinc.org
    code:
      v: 69548-6
    display:
      v: Genetic variant assessment
subject:
  link: http://fhir.nmdp.org/ig/cibmtr-reporting/Patient/PatientExample1
  reference:
    v: Patient/PatientExample1
effective: dateTime
  v: 2022-05-01
method:
  coding: http://snomed.info/id/426329006
    system:
      v: http://snomed.info/sct
    code:
      v: 426329006
    display:
      v: Fluorescence in situ hybridization
component:
  code:
    coding: https://loinc.org/rdf/81291-7
      system:
        v: http://loinc.org
      code:
        v: 81291-7
      display:
        v: Variant ISCN
  value: CodeableConcept
    coding:
      system:
        v: https://iscn.karger.com
      code:
        v: 47<2n>,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2)
component:
  code:
    coding: https://loinc.org/rdf/48002-0
      system:
        v: http://loinc.org
      code:
        v: 48002-0
      display:
        v: Genomic source class
  value: CodeableConcept
    coding: LA6684-0
      system:
        v: http://loinc.org
      code:
        v: LA6684-0
      display:
        v: Somatic