CIBMTR Reporting Implementation Guide
0.1.8 - Trial Use 1

This page is part of the CIBMTR Reporting Implementation Guide (v0.1.8: Release Draft) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: Cytogenetics-Example-1 - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="Cytogenetics-Example-1"/>
  <meta>
    <profile
             value="http://fhir.nmdp.org/ig/cibmtr-reporting/StructureDefinition/cibmtr-cytogenetics"/>
    <security>
      <system
              value="http://terminology.cibmtr.org/codesystem/transplant-center"/>
      <code value="rc_99999"/>
      <display value="99999 My Transplant Center"/>
    </security>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation Cytogenetics-Example-1</b></p><a name="Cytogenetics-Example-1"> </a><a name="hcCytogenetics-Example-1"> </a><a name="Cytogenetics-Example-1-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></p><p><b>subject</b>: <a href="Patient-PatientExample1.html">Jane Doe  Female, DoB Unknown ( http://example.org/mrn#abc)</a></p><p><b>effective</b>: 2022-05-01</p><p><b>method</b>: <span title="Codes:{http://snomed.info/sct 426329006}">Fluorescence in situ hybridization</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 81291-7}">Variant ISCN</span></p><p><b>value</b>: <span title="Codes:{https://iscn.karger.com 47&lt;2n&gt;,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2)}">47&lt;2n&gt;,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 48002-0}">Genomic source class</span></p><p><b>value</b>: <span title="Codes:{http://loinc.org LA6684-0}">Somatic</span></p></blockquote></div>
  </text>
  <status value="final"/>
  <category>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/observation-category"/>
      <code value="laboratory"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="69548-6"/>
      <display value="Genetic variant assessment"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/PatientExample1"/>
  </subject>
  <effectiveDateTime value="2022-05-01"/>
  <method>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="426329006"/>
      <display value="Fluorescence in situ hybridization"/>
    </coding>
  </method>
  <component>
    <code>
      <coding>
        <system value="http://loinc.org"/>
        <code value="81291-7"/>
        <display value="Variant ISCN"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="https://iscn.karger.com"/>
        <code
              value="47&lt;2n&gt;,XY,-7,+8,t(9;22)(q34.1;q11.2),i(17)(q10),+der(22)t(9;22)(q34.1;q11.2)"/>
      </coding>
    </valueCodeableConcept>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://loinc.org"/>
        <code value="48002-0"/>
        <display value="Genomic source class"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA6684-0"/>
        <display value="Somatic"/>
      </coding>
    </valueCodeableConcept>
  </component>
</Observation>