HLA Reporting Implementation Guide
0.0.1 - Draft
This page is part of the HLA Reporting Implementation Guide (v0.0.1: Trial Use: 1) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions
HLA Allele profile of haplotype observation
The official URL for this profile is:
http://fhir.nmdp.org/ig/hla-reporting/StructureDefinition/hla-allele
Description of Profiles, Differentials, Snapshots and how the different presentations work.
This structure is derived from Haplotype
Summary
Mandatory: 3 elements
Must-Support: 1 element
Prohibited: 5 elements
Structures
This structure refers to these other structures:
Slices
This structure defines the following Slices:
This structure is derived from Haplotype
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | 0..* | Haplotype | Haplotype | |
![]() ![]() ![]() | 1..1 | CodeableConcept | Actual result | |
![]() ![]() ![]() | 1..1 | CodeableConcept | Haplotype name/code Required Pattern: At least the following | |
![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://glstring.org | |
![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() | 0..* | (Slice Definition) | Related measurements the observation is made from Slice: Unordered, Open by pattern:resolve().code | |
![]() ![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() ![]() | 0..* | Reference(HLA Molecular Sequence) | Related measurements the observation is made from | |
![]() ![]() ![]() | 1..* | BackboneElement | Component results | |
![]() ![]() ![]() | S | 1..1 | BackboneElement | Gene studied ID |
![]() ![]() ![]() ![]() | 1..1 | CodeableConcept | If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HLA Gene Name Value Set (required) | |
![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() | 0..0 | |||
![]() |
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | I | 0..* | Haplotype | Haplotype |
![]() ![]() ![]() | Σ | 0..1 | string | Logical id of this artifact |
![]() ![]() ![]() | ΣI | 0..1 | Meta | Metadata about the resource |
![]() ![]() ![]() | ?!ΣI | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() ![]() | I | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred) Max Binding: AllLanguages |
![]() ![]() ![]() | I | 0..1 | Narrative | Text summary of the resource, for human interpretation |
![]() ![]() ![]() | 0..* | Resource | Contained, inline Resources | |
![]() ![]() ![]() | I | 0..* | Extension | Extension Slice: Unordered, Open by value:url |
![]() ![]() ![]() | I | 0..1 | Reference(BodyStructure) | Target anatomic location or structure URL: http://hl7.org/fhir/StructureDefinition/bodySite |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Secondary findings are genetic test results that provide information about variants in a gene unrelated to the primary purpose for the testing, most often discovered when [Whole Exome Sequencing (WES)](https://en.wikipedia.org/wiki/Exome_sequencing) or [Whole Genome Sequencing (WGS)](https://en.wikipedia.org/wiki/Whole_genome_sequencing) is performed. This extension should be used to denote when a genetic finding is being shared as a secondary finding, and ideally refer to a corresponding guideline or policy statement.
For more detail, please see:
https://ghr.nlm.nih.gov/primer/testing/secondaryfindings URL: http://hl7.org/fhir/StructureDefinition/observation-secondaryFinding Binding: ObservationCategoryCodes (extensible) |
![]() ![]() ![]() | ?!I | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() ![]() | ΣI | 0..* | Identifier | Business Identifier for observation |
![]() ![]() ![]() | ΣI | 0..* | Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest) | Fulfills plan, proposal or order |
![]() ![]() ![]() | ΣI | 0..* | Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy) | Part of referenced event |
![]() ![]() ![]() | ?!ΣI | 1..1 | code | registered | preliminary | final | amended + Binding: ObservationStatus (required) |
![]() ![]() ![]() | I | 1..* | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred) Required Pattern: At least the following |
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() | 1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Type of observation (code / type) Binding: LOINCCodes (example) Required Pattern: At least the following |
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() | 1..1 | code | Symbol in syntax defined by the system Fixed Value: 84414-2 | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() | ΣI | 0..1 | Reference(Patient | Group | Location) | Who and/or what the observation is about |
![]() ![]() ![]() | ΣI | 0..* | Reference(Resource) | What the observation is about, when it is not about the subject of record |
![]() ![]() ![]() | ΣI | 0..1 | Reference(Encounter) | Healthcare event during which this observation is made |
![]() ![]() ![]() | ΣI | 0..1 | (Slice Definition) | Clinically relevant time/time-period for observation Slice: Unordered, Closed by type:$this |
![]() ![]() ![]() ![]() | ΣI | 0..1 | dateTime | Clinically relevant time/time-period for observation |
![]() ![]() ![]() | ΣI | 0..1 | instant | Date/Time this version was made available |
![]() ![]() ![]() | ΣI | 0..1 | Reference(Practitioner | Organization | Patient | RelatedPerson) | Who is responsible for the observation |
![]() ![]() ![]() | ΣI | 1..1 | (Slice Definition) | Actual result Slice: Unordered, Closed by type:$this |
![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Haplotype name/code Binding: (unbound) (example) Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://glstring.org | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | code | Symbol in syntax defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Why the result is missing Binding: DataAbsentReason (extensible) |
![]() ![]() ![]() | I | 0..* | Annotation | Comments about the observation |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Observed body part Binding: SNOMEDCTBodyStructures (example) |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Haplotype determination method Binding: LOINC Answer List LL4050-2 (extensible) |
![]() ![]() ![]() | I | 0..1 | Reference(Specimen) | Specimen examined |
![]() ![]() ![]() | I | 0..1 | Reference(Device | DeviceMetric) | (Measurement) Device |
![]() ![]() ![]() | ΣI | 0..* | Reference(Observation | QuestionnaireResponse | MolecularSequence) | Related resource that belongs to the Observation group |
![]() ![]() ![]() | ΣI | 0..* | (Slice Definition) | Related measurements the observation is made from Slice: Unordered, Open by pattern:resolve().code |
![]() ![]() ![]() ![]() | ΣI | 0..* | Reference(HLA Molecular Sequence) | Related measurements the observation is made from |
![]() ![]() ![]() | ΣI | 1..* | (Slice Definition) | Component results Slice: Unordered, Open by pattern:code |
![]() ![]() ![]() ![]() | Content/Rules for all slices | |||
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Extension | Additional content defined by implementations |
![]() ![]() ![]() ![]() ![]() | ?!ΣI | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example) |
![]() ![]() ![]() ![]() ![]() | ΣI | 0..1 | Actual component result | |
![]() ![]() ![]() ![]() ![]() ![]() | Quantity | |||
![]() ![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||
![]() ![]() ![]() ![]() ![]() ![]() | string | |||
![]() ![]() ![]() ![]() ![]() ![]() | boolean | |||
![]() ![]() ![]() ![]() ![]() ![]() | integer | |||
![]() ![]() ![]() ![]() ![]() ![]() | Range | |||
![]() ![]() ![]() ![]() ![]() ![]() | Ratio | |||
![]() ![]() ![]() ![]() ![]() ![]() | SampledData | |||
![]() ![]() ![]() ![]() ![]() ![]() | time | |||
![]() ![]() ![]() ![]() ![]() ![]() | dateTime | |||
![]() ![]() ![]() ![]() ![]() ![]() | Period | |||
![]() ![]() ![]() ![]() ![]() | I | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible) |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Unknown reference to #Observation.referenceRange Provides guide for interpretation of component result | |
![]() ![]() ![]() ![]() | SΣI | 1..1 | BackboneElement | Gene studied ID |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Extension | Additional content defined by implementations |
![]() ![]() ![]() ![]() ![]() | ?!ΣI | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example) Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 1..1 | code | Symbol in syntax defined by the system Fixed Value: 48018-6 | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HLA Gene Name Value Set (required) |
![]() ![]() ![]() ![]() ![]() | I | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible) |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Unknown reference to #Observation.referenceRange Provides guide for interpretation of component result | |
![]() |
This structure is derived from Haplotype
Summary
Mandatory: 3 elements
Must-Support: 1 element
Prohibited: 5 elements
Structures
This structure refers to these other structures:
Slices
This structure defines the following Slices:
Differential View
This structure is derived from Haplotype
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | 0..* | Haplotype | Haplotype | |
![]() ![]() ![]() | 1..1 | CodeableConcept | Actual result | |
![]() ![]() ![]() | 1..1 | CodeableConcept | Haplotype name/code Required Pattern: At least the following | |
![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://glstring.org | |
![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() | 0..* | (Slice Definition) | Related measurements the observation is made from Slice: Unordered, Open by pattern:resolve().code | |
![]() ![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() ![]() | 0..* | Reference(HLA Molecular Sequence) | Related measurements the observation is made from | |
![]() ![]() ![]() | 1..* | BackboneElement | Component results | |
![]() ![]() ![]() | S | 1..1 | BackboneElement | Gene studied ID |
![]() ![]() ![]() ![]() | 1..1 | CodeableConcept | If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HLA Gene Name Value Set (required) | |
![]() ![]() ![]() | 0..0 | |||
![]() ![]() ![]() | 0..0 | |||
![]() |
Snapshot View
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | I | 0..* | Haplotype | Haplotype |
![]() ![]() ![]() | Σ | 0..1 | string | Logical id of this artifact |
![]() ![]() ![]() | ΣI | 0..1 | Meta | Metadata about the resource |
![]() ![]() ![]() | ?!ΣI | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() ![]() | I | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred) Max Binding: AllLanguages |
![]() ![]() ![]() | I | 0..1 | Narrative | Text summary of the resource, for human interpretation |
![]() ![]() ![]() | 0..* | Resource | Contained, inline Resources | |
![]() ![]() ![]() | I | 0..* | Extension | Extension Slice: Unordered, Open by value:url |
![]() ![]() ![]() | I | 0..1 | Reference(BodyStructure) | Target anatomic location or structure URL: http://hl7.org/fhir/StructureDefinition/bodySite |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Secondary findings are genetic test results that provide information about variants in a gene unrelated to the primary purpose for the testing, most often discovered when [Whole Exome Sequencing (WES)](https://en.wikipedia.org/wiki/Exome_sequencing) or [Whole Genome Sequencing (WGS)](https://en.wikipedia.org/wiki/Whole_genome_sequencing) is performed. This extension should be used to denote when a genetic finding is being shared as a secondary finding, and ideally refer to a corresponding guideline or policy statement.
For more detail, please see:
https://ghr.nlm.nih.gov/primer/testing/secondaryfindings URL: http://hl7.org/fhir/StructureDefinition/observation-secondaryFinding Binding: ObservationCategoryCodes (extensible) |
![]() ![]() ![]() | ?!I | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() ![]() | ΣI | 0..* | Identifier | Business Identifier for observation |
![]() ![]() ![]() | ΣI | 0..* | Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest) | Fulfills plan, proposal or order |
![]() ![]() ![]() | ΣI | 0..* | Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy) | Part of referenced event |
![]() ![]() ![]() | ?!ΣI | 1..1 | code | registered | preliminary | final | amended + Binding: ObservationStatus (required) |
![]() ![]() ![]() | I | 1..* | CodeableConcept | Classification of type of observation Binding: ObservationCategoryCodes (preferred) Required Pattern: At least the following |
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/observation-category | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() | 1..1 | code | Symbol in syntax defined by the system Fixed Value: laboratory | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Type of observation (code / type) Binding: LOINCCodes (example) Required Pattern: At least the following |
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() | 1..1 | code | Symbol in syntax defined by the system Fixed Value: 84414-2 | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() | ΣI | 0..1 | Reference(Patient | Group | Location) | Who and/or what the observation is about |
![]() ![]() ![]() | ΣI | 0..* | Reference(Resource) | What the observation is about, when it is not about the subject of record |
![]() ![]() ![]() | ΣI | 0..1 | Reference(Encounter) | Healthcare event during which this observation is made |
![]() ![]() ![]() | ΣI | 0..1 | (Slice Definition) | Clinically relevant time/time-period for observation Slice: Unordered, Closed by type:$this |
![]() ![]() ![]() ![]() | ΣI | 0..1 | dateTime | Clinically relevant time/time-period for observation |
![]() ![]() ![]() | ΣI | 0..1 | instant | Date/Time this version was made available |
![]() ![]() ![]() | ΣI | 0..1 | Reference(Practitioner | Organization | Patient | RelatedPerson) | Who is responsible for the observation |
![]() ![]() ![]() | ΣI | 1..1 | (Slice Definition) | Actual result Slice: Unordered, Closed by type:$this |
![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Haplotype name/code Binding: (unbound) (example) Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://glstring.org | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | code | Symbol in syntax defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Why the result is missing Binding: DataAbsentReason (extensible) |
![]() ![]() ![]() | I | 0..* | Annotation | Comments about the observation |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Observed body part Binding: SNOMEDCTBodyStructures (example) |
![]() ![]() ![]() | I | 0..1 | CodeableConcept | Haplotype determination method Binding: LOINC Answer List LL4050-2 (extensible) |
![]() ![]() ![]() | I | 0..1 | Reference(Specimen) | Specimen examined |
![]() ![]() ![]() | I | 0..1 | Reference(Device | DeviceMetric) | (Measurement) Device |
![]() ![]() ![]() | ΣI | 0..* | Reference(Observation | QuestionnaireResponse | MolecularSequence) | Related resource that belongs to the Observation group |
![]() ![]() ![]() | ΣI | 0..* | (Slice Definition) | Related measurements the observation is made from Slice: Unordered, Open by pattern:resolve().code |
![]() ![]() ![]() ![]() | ΣI | 0..* | Reference(HLA Molecular Sequence) | Related measurements the observation is made from |
![]() ![]() ![]() | ΣI | 1..* | (Slice Definition) | Component results Slice: Unordered, Open by pattern:code |
![]() ![]() ![]() ![]() | Content/Rules for all slices | |||
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Extension | Additional content defined by implementations |
![]() ![]() ![]() ![]() ![]() | ?!ΣI | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example) |
![]() ![]() ![]() ![]() ![]() | ΣI | 0..1 | Actual component result | |
![]() ![]() ![]() ![]() ![]() ![]() | Quantity | |||
![]() ![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||
![]() ![]() ![]() ![]() ![]() ![]() | string | |||
![]() ![]() ![]() ![]() ![]() ![]() | boolean | |||
![]() ![]() ![]() ![]() ![]() ![]() | integer | |||
![]() ![]() ![]() ![]() ![]() ![]() | Range | |||
![]() ![]() ![]() ![]() ![]() ![]() | Ratio | |||
![]() ![]() ![]() ![]() ![]() ![]() | SampledData | |||
![]() ![]() ![]() ![]() ![]() ![]() | time | |||
![]() ![]() ![]() ![]() ![]() ![]() | dateTime | |||
![]() ![]() ![]() ![]() ![]() ![]() | Period | |||
![]() ![]() ![]() ![]() ![]() | I | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible) |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Unknown reference to #Observation.referenceRange Provides guide for interpretation of component result | |
![]() ![]() ![]() ![]() | SΣI | 1..1 | BackboneElement | Gene studied ID |
![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Extension | Additional content defined by implementations |
![]() ![]() ![]() ![]() ![]() | ?!ΣI | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | Type of component observation (code / type) Binding: LOINCCodes (example) Required Pattern: At least the following |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() | 1..* | Coding | Code defined by a terminology system Fixed Value: (complex) | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 1..1 | uri | Identity of the terminology system Fixed Value: http://loinc.org | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Version of the system - if relevant | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 1..1 | code | Symbol in syntax defined by the system Fixed Value: 48018-6 | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Representation defined by the system | |
![]() ![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | boolean | If this coding was chosen directly by the user | |
![]() ![]() ![]() ![]() ![]() ![]() | 0..1 | string | Plain text representation of the concept | |
![]() ![]() ![]() ![]() ![]() | ΣI | 1..1 | CodeableConcept | If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: HLA Gene Name Value Set (required) |
![]() ![]() ![]() ![]() ![]() | I | 0..1 | CodeableConcept | Why the component result is missing Binding: DataAbsentReason (extensible) |
![]() ![]() ![]() ![]() ![]() | I | 0..* | Unknown reference to #Observation.referenceRange Provides guide for interpretation of component result | |
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Other representations of profile: Schematron
Path | Conformance | ValueSet / Code |
Observation.language | preferred | CommonLanguages Max Binding: AllLanguages |
Observation.status | required | ObservationStatus |
Observation.category | preferred | Pattern: laboratory |
Observation.code | example | Pattern: LOINC code 84414-2 |
Observation.value[x]:valueCodeableConcept | example | Pattern: null |
Observation.dataAbsentReason | extensible | DataAbsentReason |
Observation.bodySite | example | SNOMEDCTBodyStructures |
Observation.method | extensible | LOINC LL4050-2 |
Observation.referenceRange.type | preferred | ObservationReferenceRangeMeaningCodes |
Observation.referenceRange.appliesTo | example | ObservationReferenceRangeAppliesToCodes |
Observation.component.code | example | LOINCCodes |
Observation.component.dataAbsentReason | extensible | DataAbsentReason |
Observation.component:gene-studied.code | example | Pattern: LOINC code 48018-6 |
Observation.component:gene-studied.value[x] | required | HLAGeneIdVS |
Observation.component:gene-studied.dataAbsentReason | extensible | DataAbsentReason |
Observation.component:cytogenetic-location.code | example | Pattern: LOINC code 48001-2 |
Observation.component:cytogenetic-location.value[x] | example | |
Observation.component:cytogenetic-location.dataAbsentReason | extensible | DataAbsentReason |
Observation.component:ref-sequence-assembly.code | example | Pattern: LOINC code 62374-4 |
Observation.component:ref-sequence-assembly.value[x] | extensible | LOINC LL1040-6 |
Observation.component:ref-sequence-assembly.dataAbsentReason | extensible | DataAbsentReason |
Id | Path | Details | Requirements |